Harvesting, Storing, and Cooking with Microgreens
- Sarah Dillon
- Mar 25
- 3 min read
Harvesting, Storing, and Cooking with Microgreens
Microgreens are one of the easiest and fastest-growing crops, providing fresh flavor and a powerful nutrient boost in just a couple of weeks. But to get the most out of your homegrown greens, it’s important to harvest, store, and use them correctly.
In this blog, we’ll cover how to harvest microgreens at the perfect time, the best storage methods to keep them fresh, and easy ways to add them to your meals.
When and How to Harvest Microgreens
Microgreens are typically ready to harvest in 7-21 days, depending on the variety. The best time to cut them is when they have developed their first true leaves (the second set of leaves after sprouting).
Step-by-Step Guide to Harvesting Microgreens
✅ Look for true leaves – The first leaves (cotyledons) appear quickly, but wait until you see the next set of leaves before harvesting for the best flavor and nutrition.
✅ Use clean scissors or a sharp knife – Dull blades can crush delicate stems. Always use a clean tool to prevent contamination.
✅ Harvest just above the soil line – Hold a small bunch of microgreens and snip them about ¼ inch above the soil. Avoid pulling them up by the roots.
✅ Harvest in the morning – Microgreens are crispest and most flavorful when harvested early in the day before the sun causes them to lose moisture.
✅ Cut only what you need – If you won’t use them all at once, leave some growing to harvest fresh later.

How to Store Microgreens for Maximum Freshness
Microgreens are delicate and can wilt quickly if not stored properly. Use these methods to keep them fresh for up to a week.
Best Storage Methods:
✔ Rinse & Dry Gently – If your microgreens are dirty, lightly rinse them in cold water and dry them thoroughly with a salad spinner or paper towels before storing. Excess moisture can lead to spoilage.
✔ Store in an Airtight Container – Line a glass or plastic container with a dry paper towel to absorb moisture. Place the microgreens inside and seal tightly. This is what I use. https://amzn.to/4bOXsOQ ( I am an Amazon Associate and may earn commission on qualified purchases at no extra cost to you.)
✔ Use a Breathable Storage Bag – Another option is to use a ventilated bag (like a zip-top bag with small holes) to maintain humidity without excess moisture buildup.
✔ Keep in the Fridge – Store microgreens in the vegetable crisper drawer at around 35-40°F for optimal freshness.
✔ Avoid Crushing – Store in a shallow container rather than packing them tightly, as crushing can cause them to wilt faster.
How to Use Microgreens in Everyday Cooking
Microgreens add flavor, color, and a nutritional boost to almost any dish. They are incredibly versatile and can be used raw or lightly cooked.
Easy Ways to Use Microgreens:
1. In Fresh Salads
Mix microgreens with lettuce or spinach for a fresh, nutrient-packed salad. Pair with a simple vinaigrette, nuts, and cheese for added texture and flavor.
2. As a Sandwich or Wrap Topping
Use microgreens instead of (or in addition to) lettuce for a fresh crunch in sandwiches, burgers, or wraps. Try them in a turkey and avocado wrap for an extra boost of flavor.
3. Blended into Smoothies
Add a handful of mild-flavored microgreens (like sunflower or pea shoots) to smoothies for an extra dose of vitamins and minerals. They pair well with fruits like bananas, berries, and oranges.
4. In Soups and Stir-Fries
While most microgreens are best eaten raw, heartier varieties like pea shoots, broccoli, and mustard greens can be added to warm dishes. Stir them into soups, curries, and stir-fries just before serving.
5. On Top of Eggs and Omelets
Sprinkle microgreens over scrambled eggs, omelets, or avocado toast for a bright, fresh garnish.
6. As a Pizza or Pasta Topping
Add microgreens to homemade pizza or pasta after cooking for an elegant touch. Try basil or arugula microgreens on a Margherita pizza for a delicious burst of flavor.
7. In Homemade Microgreen Pesto
Blend basil, cilantro, or arugula microgreens with olive oil, garlic, Parmesan cheese, and nuts to create a fresh pesto sauce perfect for pasta, sandwiches, or grilled meats.
Final Thoughts
Knowing when and how to harvest microgreens, how to store them properly, and creative ways to use them in meals will help you get the most out of these nutrient-packed greens. Whether you're tossing them into a salad, blending them into smoothies, or topping your favorite dishes, microgreens are an easy way to add fresh, homegrown nutrition to your diet.
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